PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG291800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 287aa    MW: 31611.3 Da    PI: 7.3273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG291800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000275685130
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPka 30
                         +++ + erE+  Rd++N+ f eL ++l  +
  Pavir.8KG291800.2.p 56 KKTHKAEREKLKRDQLNELFLELGSMLDLD 85
                         678899******************999764 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-653124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1053119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.56355105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006961111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MIQLVRSREG GSRRSINLGM VADTESSNSL PGSSNAAVEM PVHGSLDQRS QEKTPKKTHK  60
AEREKLKRDQ LNELFLELGS MLDLDRQNTG KATVVGDAAR VLRDLVTQVE SLRKEQSALL  120
SERQYVSSEK TELQEENATL KSQISELANK LCVRMGNSSL GMSHRVANTR SPDLATHPMP  180
HQMWSNIPNI ISVDITRQMN TVSPLHSQHH SANDAEVYAP RPQELQLFPG ASSSPEREGS  240
HLRSAGATSP SLIDSLPSQL CLSLTQSSQD ERTSDVLVDR KERRNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55640.0callus| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979635.11e-140PREDICTED: transcription factor bHLH121-like
TrEMBLK3ZJJ91e-140K3ZJJ9_SETIT; Uncharacterized protein
STRINGSi026752m1e-139(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-34bHLH family protein